MultiTreeStatistics Class Documentation#
Package: sc.fiji.snt.analysis
Computes summary and descriptive statistics from univariate properties of Tree groups. For analysis of individual Trees use TreeStatistics.
Methods#
Getters Methods#
- static getAllMetrics()
Description copied from class: TreeStatistics
- getAnnotatedLength(int)#
Description copied from class: TreeStatistics
- getAnnotatedLengthHistogram(int)#
- getAnnotatedLengthsByHemisphere(int)#
Description copied from class: TreeStatistics
- getAnnotations()#
Description copied from class: TreeStatistics
- getAvgBranchLength()#
- getAvgContraction()#
- getAvgFractalDimension()#
- getAvgFragmentation()#
- getAvgPartitionAsymmetry()#
- getAvgRemoteBifAngle()#
- getBoxPlot(String)#
- getBranchPoints()#
Description copied from class: TreeStatistics
- getBranches()#
Description copied from class: TreeStatistics
- getCableLength()#
Description copied from class: TreeStatistics
- getCableLengthNorm(BrainAnnotation)#
- getCancelReason()#
- getContext()#
- getConvexAnalyzer()#
- getConvexHullMetric(String)#
- getDepth()#
- getDescriptiveStats(String)#
Description copied from class: TreeStatistics
- getFlowPlot(String, Collection, String, double, boolean)#
Description copied from class: TreeStatistics
- getFractalDimension()#
- getGroup()#
Gets the collection of Trees being analyzed.
- getHeight()#
- getHighestPathOrder()#
- getHistogram(String)#
Description copied from class: TreeStatistics
- getInnerBranches()#
Description copied from class: TreeStatistics
- getInnerLength()#
- getMetric(String)#
- static getMetrics()
Gets the list of metrics supported by MultiTreeStatistics.
Returns all the metrics that can be computed for groups of trees, including aggregate measures and group-specific statistics.
Other Methods#
- cancel(String)#
Main method for testing and demonstration purposes.
Creates a MultiTreeStatistics instance using demo data and displays various analysis plots including histograms and flow plots. This method is primarily used for development and debugging.
- context()#
- dispose()#
Description copied from class: TreeStatistics
- static fromCollection(Collection, String)