ShollAnalyzer Class Documentation#
Package: sc.fiji.snt.analysis
Class to retrieve Sholl metrics from a Tree.
Methods#
Getters Methods#
- getLinearStats()#
Gets the LinearProfileStats associated with this analyzer. By default, it is set to determine the polynomial of ‘best-fit’ (2-20 degree range.)
- getMaximaRadii()#
- static getMetrics()
- getNormStats()#
Gets the NormalizedProfileStats associated with this analyzer. By default it is set to determine the regression method of ‘best-fit’ (log-log or semi-log) using shell volume as normalizer (if Tree has a depth component) or shell area if Tree is 2D.
- getSecondaryMaxima()#
- getSingleValueMetrics()#
Setters Methods#
- setEnableCurveFitting(boolean)#
Sets whether curve fitting computations should be performed.
- setPolynomialFitRange(int, int)#
Sets the polynomial fit range for linear Sholl statistics.
Other Methods#
- static main(String;)