StrahlerAnalyzer Class Documentation#
Package: sc.fiji.snt.analysis
Class to perform Horton-Strahler analysis on a Tree.
Methods#
Getters Methods#
- getAvgBifurcationRatio()#
- getAvgContractions()#
- getAvgExtensionAngle(boolean, int)#
Gets the average relative extension angle for branches of a specific Strahler order.
- getAvgExtensionAngles(boolean)#
Gets a map of average relative extension angles for all Strahler orders.
- getAvgFragmentations()#
- getBifurcationRatios()#
- getBranchCounts()#
- getBranchPointCounts()#
- getBranches()#
- getExtensionAngles(boolean)#
Gets a map of relative extension angles for all branches in each Strahler order.
- getGraph()#
- getHighestBranchOrder()#
- getLengths()#
- getRelativeExtensionAngle(Path)#
Computes the relative extension angle for a StrahlerAnalyzer branch by finding the parent direction from the graph structure.
- getRootAssociatedBranches()#
- getRootNumber()#
Other Methods#
- static classify(DirectedWeightedGraph, boolean)
- dispose()#
Clears internal caches and mappings to free memory.
- static main(String;)