Visualization Methods#

Methods that create visual representations, plots, or graphical displays.

Total methods in this category: 26

AllenCompartment#

color()#

Signature: color() -> ColorRGB

Returns: (Any) the display color of this compartment (if known)

Annotation3D#

colorCode(arg0, arg1)#

Signature: colorCode(String, String) -> void

Parameters:

  • arg0 (str): - one of COLORMAPS, i.e., “grayscale”, “hotcold”, “rgb”, “redgreen”, “whiteblue”, etc.

  • arg1 (str)

Returns: None

ColorMaps#

static discreteColors(arg0, arg1)

Signature: static discreteColors(ColorTable, int) -> ColorRGB;

Parameters:

  • arg0 (Any)

  • arg1 (int)

Returns: Any

static discreteColorsAWT(arg0, arg1)

Signature: static discreteColorsAWT(ColorTable, int) -> Color;

Parameters:

  • arg0 (Any)

  • arg1 (int)

Returns: Any

static glasbeyColorsAWT(arg0)

Signature: static glasbeyColorsAWT(int) -> Color;

Parameters:

  • arg0 (int)

Returns: Any

ImpUtils#

static applyColorTable(arg0, arg1)

Signature: static applyColorTable(ImagePlus, ColorTable) -> void

Parameters:

  • arg0 (Any)

  • arg1 (Any)

Returns: None

InsectBrainCompartment#

color()#

Signature: color() -> ColorRGB

Returns: (Any) the display color of this compartment (if known)

MultiViewer3D#

viewers()#

Signature: viewers() -> List

Returns: List[Any]

NodeProfiler#

preview()#

Signature: preview() -> void

Returns: None

PathProfiler#

preview()#

Signature: preview() -> void

Returns: None

SNT#

captureView(arg0, arg1)#

Retrieves a WYSIWYG ‘snapshot’ of a tracing canvas without voxel data.

Signature: captureView(String, ColorRGB) -> ImagePlus

Parameters:

  • arg0 (str): - A case-insensitive string specifying the canvas to be captured. Either “xy” (or “main”), “xz”, “zy” or “3d” (for legacy’s 3D Viewer).

  • arg1 (Any)

Returns: (Any) the snapshot capture of the canvas as an RGB image

SNTColor#

color()#

Retrieves the AWT color

Signature: color() -> Color

Returns: (Any) the AWT color

static alphaColor(arg0, arg1)

Adds an alpha component to an AWT color.

Signature: static alphaColor(Color, double) -> Color

Parameters:

  • arg0 (Any): - the input color

  • arg1 (float)

Returns: (Any) the color with an alpha component

static colorToString(arg0)

Returns the color encoded as hex string with the format #rrggbbaa.

Signature: static colorToString(Object) -> String

Parameters:

  • arg0 (Any): - the input AWT color

Returns: (str) the converted string

static contrastColor(arg0)

Returns a suitable ‘contrast’ color.

Signature: static contrastColor(Color) -> Color

Parameters:

  • arg0 (Any): - the input color

Returns: (Any) Either white or black, as per hue of input color.

static getDistinctColors(arg0)

Returns distinct colors based on Kenneth Kelly’s 22 colors of maximum contrast (black and white excluded). More details on this SO discussion

Signature: static getDistinctColors(int) -> ColorRGB;

Parameters:

  • arg0 (int): - the number of colors to be retrieved

Returns: (Any) the maximum contrast colors

static getDistinctColorsAWT(arg0)

Signature: static getDistinctColorsAWT(int) -> Color;

Parameters:

  • arg0 (int)

Returns: Any

static getDistinctColorsHex(arg0, arg1)

Signature: static getDistinctColorsHex(int, String) -> String;

Parameters:

  • arg0 (int)

  • arg1 (str)

Returns: Any

SNTService#

newRecViewer(arg0)#

Instantiates a new standalone Reconstruction Viewer.

Signature: newRecViewer(boolean) -> Viewer3D

Parameters:

  • arg0 (bool)

Returns: (Viewer3D) The standalone Viewer3D instance

updateViewers()#

Script-friendly method for updating (refreshing) all viewers currently in use by SNT. Does nothing if no SNT instance exists.

Signature: updateViewers() -> void

Returns: None

SNTUtils#

static addViewer(arg0)

Signature: static addViewer(Viewer3D) -> void

Parameters:

  • arg0 (Viewer3D)

Returns: None

static removeViewer(arg0)

Signature: static removeViewer(Viewer3D) -> void

Parameters:

  • arg0 (Viewer3D)

Returns: None

Tree#

static assignUniqueColors(arg0)

Assigns distinct colors to a collection of Trees.

Signature: static assignUniqueColors(Collection) -> void

Parameters:

  • arg0 (List[Any]): - an optional string defining a hue to be excluded. Either ‘red’, ‘green’, or ‘blue’.

Returns: None

Viewer3D#

assignUniqueColors(arg0)#

Signature: assignUniqueColors(Collection) -> void

Parameters:

  • arg0 (List[Any])

Returns: None

colorCode(arg0, arg1, arg2)#

Runs TreeColorMapper on the specified Tree.

Signature: colorCode(Collection, String, ColorTable) -> [D

Parameters:

  • arg0 (List[Any]): - the identifier of the Tree (as per addTree(Tree))to be color mapped

  • arg1 (str)

  • arg2 (Any)

Returns: (Any) the double[] the limits (min and max) of the mapped values

WekaModelLoader#

preview()#

Signature: preview() -> void

Returns: None

Category index generated on 2026-01-02 23:09:09