SNT Class Documentation#
Package: sc.fiji.snt
Implements the SNT plugin.
Methods#
Utilities Methods#
- closeAndResetAllPanes()#
Getters Methods#
- getAverageSeparation()#
- getChannel()#
- getContext()#
- getCostType()#
- getCurrentPath()#
- getDataset()#
- getDepth()#
- getDrawDiameters()#
- getFilledBinaryImp()#
- getFilledDistanceImp()#
- getFilledImp()#
- getFilledLabelImp()#
- getFilterType()#
- getFrame()#
- getHeight()#
- getHeuristicType()#
- getImagePlus()#
Gets the Image associated with a view pane.
- getLoadedData()#
- getLoadedDataAsImp()#
Retrieves the pixel data of the main image currently loaded in memory as an ImagePlus object. Returned image is always a single channel image.
- getLoadedIterable()#
Visualization Methods#
- captureView(String, ColorRGB)#
Retrieves a WYSIWYG ‘snapshot’ of a tracing canvas without voxel data.
Other Methods#
- accessToValidImageData()#
- addFillerThread(FillerThread)#
- addListener(SNTListener)#
- autoTrace(SNTPoint, SNTPoint, PointInImage)#
Automatically traces a path from a point A to a point B. See autoTrace(List, PointInImage) for details.
- cancelPath()#
Cancels the temporary path.
- cancelSearch(boolean)#
- cancelTemporary()#
- changeUIState(int)#
- confirmTemporary(boolean)#
- createCanvas(ImagePlus, int)#
- disableEventsAllPanes(boolean)#
Description copied from interface: PaneOwner
- disableZoomAllPanes(boolean)#
- editModeAllowed()#
Assesses if activation of ‘Edit Mode’ is possible.
- enableAstar(boolean)#
Toggles the A* search algorithm (enabled by default)
- enableAutoActivation(boolean)#
- enableAutoSelectionOfFinishedPath(boolean)#
- enableSecondaryLayerTracing(boolean)#
- enableSnapCursor(boolean)#
Enables SNT’s XYZ snap cursor feature. Does nothing if no image data is available or currently loaded image is binary
- findPointInStack(int, int, int, [I)#
- findPointInStackPrecise(double, double, int, [D)#
- finished(SearchInterface, boolean)#
- flushSecondaryData()#