`BoundingBox` Class Documentation#

Package: sc.fiji.snt.util

A BoundingBox contains information (including spatial calibration) of a tracing canvas bounding box, i.e., the minimum bounding cuboid containing all nodes (SNTPoints) of a reconstructed structure.

Fields#

infostr: No description available.
xSpacingfloat: No description available.
ySpacingfloat: No description available.
zSpacingfloat: No description available.

Methods#

Utilities Methods#

clone()#: Creates a copy of this BoundingBox.

Getters Methods#

getCalibration()#: Creates a Calibration object using information from this BoundingBox

getCentroid()#

getDiagonal()#: Gets the box diagonal

getDimensions()#: Gets this BoundingBox dimensions.

getUnit()#: Gets the length unit of voxel spacing

hasDimensions()#

isScaled()#: Checks whether this BoundingBox is spatially calibrated, i.e., if voxel spacing has been specified

Setters Methods#

setDimensions(long, long, long)#: Sets the dimensions of this bounding box using uncalibrated (pixel) lengths.

setOrigin(PointInImage)#: Sets the origin for this box, i.e., its (xMin, yMin, zMin) vertex.

setOriginOpposite(PointInImage)#: Sets the origin opposite for this box, i.e., its (xMax, yMax, zMax) vertex.

setSpacing(double, double, double, String)#: Sets the voxel spacing.

setUnit(String)#: Sets the default length unit for voxel spacing (typically um, for SWC reconstructions)

Analysis Methods#

compute(Iterator)#: Computes a new positioning so that this box encloses the specified point cloud.

Other Methods#

append(Iterator)#: Computes the bounding box of the specified point cloud and appends it to this bounding box, resizing it as needed.

combine(BoundingBox)#: Combines this bounding box with another one. It is assumed both boxes share the same voxel spacing/Calibration.

contains(SNTPoint)#

contains2D(SNTPoint)#

depth()#

height()#

inferSpacing(Collection)#: Infers the voxel spacing of this box from the inter-node distances of a Collection of SWCPoints.

intersection(BoundingBox)#: Retrieves the intersection cuboid between this bounding with another bounding box. It is assumed both boxes share the same voxel spacing/Calibration.

origin()#: Retrieves the origin of this box.

originOpposite()#: Retrieves the origin opposite of this box.

scale([D)#

shift([D)#

toBoundingBox3d()#

unscaledOrigin()#: Retrieves the origin of this box in unscaled (“pixel” units)

unscaledOriginOpposite()#: Retrieves the origin opposite of this box in unscaled (“pixel” units)

width()#

See Also#